Flannan may refer to:
- Flannán mac Toirrdelbaig, saint and patron of Killaloe
 - Flannan Isles, a small island group in the Outer Hebrides of Scotland
 - Flannan Isles Lighthouse, lighthouse on Eilean Mòr, one of the Flannan Isles
 - St Flannan's College, Irish secondary school
 - Flannan Isle, poem by Wilfrid Wilson Gibson
 
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