| Tournament details | |
|---|---|
| Country |  Scotland |
| Defending champions | Bathgate Thistle |
| Final positions | |
| Champions | Auchinleck Talbot |
| Runner-up | Clydebank |
The 2008–09 Scottish Junior Cup was a competition in Scottish Junior football. It was won by Auchinleck Talbot after they defeated Clydebank 2–1 in the final which had an attendance of 8,122.
Under a 2007 rule change, the Junior Cup winners (along with winners of the North, East and West regional leagues) qualify for the senior Scottish Cup; Auchinleck Talbot therefore competed in the 2009–10 Scottish Cup.
First round
These ties were scheduled to take place on Saturday, TBC.
| Home Team | Score | Away Team |
|---|---|---|
Second round
These ties were scheduled to take place on Saturday, TBC.
| Home Team | Score | Away Team |
|---|---|---|
Third round
These ties were scheduled to take place on Saturday, TBC
| Home Team | Score | Away Team |
|---|---|---|
Fourth round
These ties were scheduled to take place on Saturday, TBC.
| Home Team | Score | Away Team |
|---|---|---|
| Ashfield | 3 – 1 | Annbank United |
| Auchinleck Talbot | 9 – 0 | Dundee Violet |
| Ballingry Rovers | 1 – 1 | Glenrothes |
| Replay | 0 – 6 | |
| Carluke Rovers | 1 – 4 | Camelon Juniors |
| Carnoustie Panmure | 1 – 0 | Girvan |
| Dunipace | 0 – 4 | Beith Juniors |
| Dyce | 2 – 2 | Montrose Roselea |
| Replay | 0 – 2 | |
| Irvine Meadow XI | 4 – 1 | Maryhill |
| Kilsyth Rangers | 1 – 1 | Pollok |
| Replay | 1 – 2 | |
| Kirkintilloch Rob Roy | 4 – 0 | Thornton Hibs |
| Newtongrange Star | 3 – 1 | Larkhall Thistle |
| Penicuik Athletic | 0 – 0 | Lanark United |
| Replay | 2 – 4 | |
| St Anthony's | 0 – 1 | Clydebank |
| Shotts Bon Accord | 1 – 3 | Petershill |
| Thorniewood United | 2 – 2 | Maybole |
| Replay | 2 – 1 | |
| Whitburn Junior | 1 – 2 | Arthurlie |
Fifth round
These ties were scheduled to take place on Saturday, TBC.
| Home Team | Score | Away Team |
|---|---|---|
| Arthurlie | 1 – 0 | Camelon |
| Auchinleck Talbot | 3 – 1 | Beith |
| Clydebank | 3 – 3 | Carnoustie Panmure |
| Replay | 1 – 1 | |
| Penalties | 4 – 3 | |
| Irvine Meadow XI | 2 – 2 | Ashfield |
| Replay | 3 – 2 | |
| Kirkintilloch Rob Roy | 3 – 0 | Glenrothes |
| Lanark United | 1 – 2 | Newtongrange Star |
| Montrose Roselea | 0 – 0 | Petershill |
| Replay | 1 – 2 | |
| Thorniewood United | 1 – 3 | Pollok |
Quarter finals
These ties were played on Saturday, TBC.
| Home Team | Score | Away Team |
|---|---|---|
| Auchinleck Talbot | 1 – 1 | Arthurlie |
| Replay | 3 – 1 | |
| Irvine Meadow XI | 0 – 2 | Pollok |
| Newtongrange Star | 0 – 2 | Kirkintilloch Rob Roy |
| Petershill | 1 – 2 | Clydebank |
Semi-finals
These ties were played on Saturday, TBC.
| Home Team | Score | Away Team | Att | Comments |
|---|---|---|---|---|
| Pollok | 2 – 3 | Clydebank | 1,480 | |
| Clydebank | 0 – 1 | Pollok | 1,629 | @ Vale of Leven FC |
| Agg | 3 – 3 | Clydebank won 4-1 on pens | ||
| Kirkintilloch Rob Roy | 0 – 0 | Auchinleck Talbot | 1,321 | |
| Auchinleck Talbot | 1 – 0 | Kirkintilloch Rob Roy | 1,400 | |
| Agg | 1 – 0 | Auchinleck Talbot won |
Final
The final took place on Sunday, TBC.
| Home Team | Score | Away Team | Att | Comments |
|---|---|---|---|---|
| Auchinleck Talbot | 2 – 1 | Clydebank | 8,122 | BBC Report |